Mode | SNPs | Bam files | Platform | Notes |
---|---|---|---|---|
Mode 1a | Given | Pooled one | 10x scRNA-seq, scDNA-seq, scATAC-seq | Set --UMItag None for scDNA-seq and scATAC-seq data |
Mode 1b | Given | Each per cell | SMART-seq2, bulk RNA-seq | N.A. |
Mode 2a | To detect | Pooled one | 10x scRNA-seq, scDNA-seq, scATAC-seq | Set --UMItag None for scDNA-seq and scATAC-seq data |
Mode 2b | To detect | Each per cell | SMART-seq2, bulk RNA-seq | N.A. |
cellsnp-lite -s $BAM -b $BARCODE -O $OUT_DIR -R $REGION_VCF -p 10 --minMAF 0.1 --minCOUNT 20 --gzip
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原创声明:本文系作者授权腾讯云开发者社区发表,未经许可,不得转载。
如有侵权,请联系 cloudcommunity@tencent.com 删除。